Got some more bugs now. I figured out why they are happening, but I'm not sure about how to go about fixing.
Threshold by selection is completed and functions (you draw a square - gesturewise)
Erode single diatoms functions (bug if blobs are overlapping)
Main bug is that when ever I clone an image (from bitmap source) it gives me an out of memory exception.
Bitmap Source --> Bitmap Image (Clone[Rectangle, Bitmap Image Pixel Format])
I was told this error in C# doesn't necessarily mean Out of Memory. But that you could have an unsupported pixel format (How to fix this I'm not sure)
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